.. khmer documentation master file, created by sphinx-quickstart on Wed Aug 4 10:20:23 2010. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. khmer -- k-mer counting & filtering FTW ======================================= :Authors: Michael R. Crusoe, Greg Edvenson, Jordan Fish, Adina Howe, Luiz Irber, Eric McDonald, Joshua Nahum, Kaben Nanlohy, Humberto Ortiz-Zuazaga, Jason Pell, Jared Simpson, Camille Scott, Ramakrishnan Rajaram Srinivasan, Qingpeng Zhang, and C. Titus Brown :Contact: khmer-project@idyll.org :License: BSD khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name. There are two mailing lists dedicated to khmer, an announcements-only list and a discussion list. To search their archives and sign-up for them, please visit the following URLs: * Discussion: http://lists.idyll.org/listinfo/khmer * Announcements: http://lists.idyll.org/listinfo/khmer-announce The archives for the khmer list are available at: http://lists.idyll.org/pipermail/khmer/ khmer development has largely been supported by AFRI Competitive Grant no. `2010-65205-20361 `__ from the USDA NIFA, and is now funded by the National Human Genome Research Institute of the National Institutes of Health under Award Number `R01HG007513 `__, both to C. Titus Brown. Contents: .. toctree:: :maxdepth: 1 introduction install examples guide scripts blog-posts choosing-table-sizes partitioning-big-data design details development galaxy known-issues release crazy-ideas contributors biblio LICENSE Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`