An incomplete bibliography of papers using khmer
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Digital normalization
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Multiple Single-Cell Genomes Provide Insight into Functions of
Uncultured Deltaproteobacteria in the Human Oral Cavity.  Campbell et
al., PLoS One, 2013, doi:10.1371/journal.pone.0059361.  [ `paper link <http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0059361>`__ ]

Insights into archaeal evolution and symbiosis from the genomes of a
nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool,
Yellowstone National Park.  Podar et al., Biology Direct, 2013
doi:10.1186/1745-6150-8-9.
[ `paper link <http://www.biology-direct.com/content/8/1/9/abstract>`__ ]