.. This file is part of khmer, https://github.com/dib-lab/khmer/, and is Copyright (C) 2010-2015 Michigan State University Copyright (C) 2015 The Regents of the University of California. It is licensed under the three-clause BSD license; see LICENSE. Contact: khmer-project@idyll.org Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the Michigan State University nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Contact: khmer-project@idyll.org ********************************* Contributors and Acknowledgements ********************************* khmer is a product of the Lab for Data Intensive Biology at the University of California, Davis (the succesor to the GED lab at Michigan State University), http://ivory.idyll.org/lab/ --- C. Titus Brown wrote the initial ktable and hashtable implementations, as well as hashbits and counting_hash. Jason Pell implemented many of the C++ k-mer filtering functions. Qingpeng contributed code to do unique k-mer counting. Adina Howe, Rosangela Canino-Koning, and Arend Hintze contributed significantly to discussions of approaches and algorithms; Adina wrote a number of scripts. Jared T. Simpson (University of Cambridge, Sanger Institute) contributed paired-end support for digital normalization. Eric McDonald thoroughly revised many aspects of the code base, made much of the codebase thread safe, and otherwise improved performance dramatically. Michael R. Crusoe took over maintainership June, 2013. Last updated by MRC on 2015-07-31