Known Issues¶

load-graph.py in multithreaded mode will find slightly different number of unique kmers. This is being investigated in https://github.com/dib-lab/khmer/issues/1248
Any scripts that consume FASTA or FASTQ data are unresponsive to attempts to terminate the program with ctrl-c. Eventually khmer should handle this properly, but for now it should be possible to halt a script using ctrl-\. This is being tracked in https://github.com/dib-lab/khmer/issues/1618.